All functions

bcbio bcbio<- flatFiles interestingGroups interestingGroups<- metrics plotDot plotGene plotQC plotViolin sampleMetadata sampleMetadata<- selectSamples tpm

S4 Generics

assertFormalInterestingGroups

Interesting Groups Formal Assert Check

bcbioBase-package

bcbioBase

checkInterestingGroups

Check Interesting Groups

copyToDropbox

Copy Files to Dropbox

prepareSummarizedExperiment

Prepare Summarized Experiment

prepareTemplate

Prepare R Markdown Template File

readDataVersions

Read Data Versions

readLogFile

Read Log File

readSampleMetadataFile

Read Sample Metadata File

sampleYAML

Sample YAML Metadata Utilities

sampleYAMLMetadata

Sample Metadata from YAML

sampleYAMLMetrics

Sample Metrics from YAML File

uniteInterestingGroups

Unite Interesting Groups