Quality control and differential expression for bcbio-nextgen RNA-seq experiments.

Installation

This is an R package.

Bioconductor method

source("https://bioconductor.org/biocLite.R")
biocLite("hbc/bcbioRnaseq")

devtools method

install.packages("devtools")
devtools::install_github("hbc/bcbioRnaseq")

Examples

HTML reports rendered from the default RMarkdown templates included in the package.

Contribute

  • Only current release branch will be maintened
  • For major changes, create a new branch and a pull request that will be revised.
  • For small changes, commit directly to master.
  • For fixes in releases, commit to releases branches.
  • Open issues or make pull request for changes affecting bcbioRNADataSet object or setup.R