Please follow all recommended guidelines defined in the basejump package.

Administrator guidelines

  • Do not commit changes directly to master branch.
  • Please avoid creating unnecessary new branches. Use a fork instead.

R Markdown templates

Check that all templates render correctly.

git clone https://github.com/bcbio/bcbio_rnaseq_output_example.git
cd bcbio_rnaseq_output_example
Rscript -e 'testthat::test_file("test_reports.R")'

Ensure that all expected HTML files are created inside the reports/ directory, and that all figures and tables look correct.