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Past Workshops

2024 (online and in person)

  • [Current Topics Workshop] April 17: Needle in a Haystack - Finding and summarizing data from colossal files
  • [HMS/DFHCC/CFAR] April 9, 12, 16, 19: Introduction to R
  • [HMS/DFHCC/CFAR] March 29, April 2, April 5: Bulk RNA-seq (Part 1 - FASTQ to counts)
  • [Current Topics Workshop] March 20: Accelerate with Automation - Making your code work for you 
  • [HMS/DFHCC/CFAR] March 5, 8, 12: Introduction to Shell
  • [Current Topics Workshop] February 21: The Foundation - Basic Shell
  • [HMS/DFHCC/CFAR]** February 9, 13, 16: Introduction to single-cell RNA-seq
  • [HMS/DFHCC/CFAR]** January 23, 26, 30, February 2: Introduction to R
    ** In-person Workshops

2023 (online and in person)

  • [HMS/DFHCC/CFAR] November 28th, Dec 1st, 5th, 8th: Introduction to R
  • [Current Topics Workshop] November 15th: Rmarkdown
  • [HMS/DFHCC/CFAR] November 14th, 17th, 21st: Introduction to Shell
  • [Current Topics Workshop] October 18th: Publication perfect II
  • [HMS/DFHCC/CFAR]** October 10th, 13th, 17th: Introduction to single-cell RNA-seq
  • [Current Topics Workshop] September 20th: Publication perfect I 
  • [HMS/DFHCC] September 5th, 8th, 12th, 15th: Introduction to Differential Gene Expression (DGE) analysis
  • [Current Topics Workshop] August 16th: R Basics Practice
  • [HMS/DFHCC] August 11th, 15th, 18th: Intro to Chromatin Analysis
  • [HMS/DFHCC] August 8th, 11th, 15th, 18th: Introduction to R 
  • [Current Topics Workshop] July 19th: Introduction to R
  • [Current Topics Workshop] June 21st: Python basics
  • [HMS/DFHCC]** June 20th, 23rd, 27th: Introduction to Shell
  • [CFAR] June 6th, 9th, 12th, 16th: Bulk RNA-seq (Part II - Differential gene expression)
  • [HMS/DFHCC]** May 16th, 19th, 23rd, 26th: Bulk RNA-seq (Part II - Differential gene expression)
  • [Current Topics Workshop] May 17th: ML4BIO
  • [HMS/DFHCC]** April 28th, May 2nd, 5th, 9th: Introduction to R
  • [Current Topics Workshop] April 19th: Git/Github
  • [HMS] April 18th, 20th, 25th, 27th: Python with CCB
  • [CFAR] April 11th, 14th, 18th, 21st: Introduction to R
  • [HMS/DFHCC] March 17th, 21st, 24th: Bulk RNA-seq (Part 1 - FASTQ to counts)
  • [Current Topics Workshop] March 15th: Advanced Shell
  • [HMS/DFHCC] March 3rd, 7th, 10th: Introduction to Command-line Interface (Shell) & HPC
  • [Current Topics Workshop] February 15th: Intermediate Shell
  • [HMS/DFHCC] February 10th, 14th, 17th: Introduction to single-cell RNA-seq
  • [HSCI/HMS/DFHCC] January 24th, 27th, 31st, February 3rd: Introduction to R
  • [Current Topics Workshop] January 18th: Introduction to Shell
    ** In-person Workshops

2022 (online)

  • [HSCI/HMS/DFHCC] December 2nd, 6th, 9th: Introduction to single-cell RNA-seq
  • [HSCI/HMS/DFHCC] November 15th, 18th, 22nd: Understanding chromatin biology using high-throughput sequencing
  • [CFAR] November 7th, 10th, 14th, 17th: Introduction to R
  • [Current Topics Workshop] November 2nd: Introduction to Shell
  • [HSCI/HMS/DFHCC] October 25th, 28th, November 1st, 4th: Introduction to R
  • [HSCI/HMS/DFHCC] October 11th, 14th, 18th: Introduction to Command-line Interface (Shell) & HPC
  • [Current Topics Workshop] October 5th: Generating reports with Rmarkdown
  • [HSCI/HMS/DFHCC] September 27th, 30th, October 4th: Introduction to single-cell RNA-seq
  • [HSCI/HMS/DFHCC] September 9th, 13th, 16th & 20th: Bulk RNA-seq (Part II - Differential gene expression)
  • [Current Topics Workshop] September 7th: R practice exercises
  • [HSCI/HMS/DFHCC] August 26th, 30th, September 2nd: Bulk RNA-seq (Part 1 - FASTQ to counts)
  • [Current Topics Workshop] August 10th: Introduction to Python
  • [HMS Nanocourse] August 9th, 12th, 16th & 19th: Introduction to R 
  • [HSCI/HMS/DFHCC] August 9th, 12th, 16th & 19th: Introduction to R
  • [HSCI/HMS/DFHCC] July 26th, 29th, August 2nd: Introduction to Command-line Interface (Shell) & HPC
  • [HSCI/HMS/DFHCC] June 23rd, 27th, 30th: ChIP-seq Part 1 (Experimental design to Peak calling) 
  • [HSCI/HMS/DFHCC] June 9th, 13th, 16th: Introduction to Command-line Interface (Shell) & HPC
  • [HSPH] May 19th, 23rd, 26th: Introduction to single-cell RNA-seq
  • [HSCI/HMS/DFHCC] May 6th, 10th, 13th & 17th: Bulk RNA-seq (Part II - Differential gene expression)
  • [HSCI/HMS/DFHCC] April 19th, 22nd, 26th & 29th: Introduction to R
  • [HSCI/HMS/DFHCC] March 29th, April 1st & 5th: Bulk RNA-seq (Part 1 - FASTQ to counts)
  • [HSPH] March 11th, 15th, 18th & 22nd: Introduction to R
  • [HSCI/HMS/DFHCC] February 24th, March 1st, 4th: Introduction to Command-line Interface (Shell) & HPC
  • [HSCI/HMS/DFHCC] February 11th, 15th, 18th: Introduction to single-cell RNA-seq
  • [HSCI/HMS/DFHCC] January 25th, 28th, February 1st & 4th: Introduction to R

2021 (online)

  • [Current Topics Workshop] December 15th: Applications for single cell multimodal analyses
  • [HSCI/HMS/DFHCC] December 3rd, 7th, 10th, 14th: Bulk RNA-seq (Part II - Differential gene expression)
  • [HSPH] November 16th, 22nd & 26th: Bulk RNA-seq (Part I - FASTQ to counts)
  • [Current Topics Workshop] November 10th: Applications for scATAC-seq
  • [HSCI/HMS/DFHCC] November 2nd, 5th, 9th & 12th: Introduction to R
  • [HSPH] October 19th, 22nd & 26th: Introduction to Command-line Interface (Shell) & HPC
  • [Current Topics Workshop] October 13th: Applications for scRNA-seq
  • [HSCI/HMS/DFHCC] October 5th, 8th & 12th: Bulk RNA-seq (Part I - FASTQ to counts)
  • [HSPH] September 29th: Introduction to RMarkdown
  • [HSCI/HMS/DFHCC] September 21st, 24th & 28th: ChIP-seq Part 1 (Experimental design to Peak calling)
  • [Current Topics Workshop] September 8th: Publication Perfect: Part II
  • [HSPH] September 1st, 3rd, 7th & 10th: Introduction to R
  • [HSCI/HMS/DFHCC] August 24th, 27th & 31st: Introduction to Command-line Interface (Shell) & HPC
  • [HSCI/HMS/DFHCC] July 30th, August 3rd & 6th: Introduction to single-cell RNA-seq
  • [Current Topics Workshop] July 28th: Publication Perfect: Part I
  • [HSCI/HMS/DFHCC] July 9th, 13th, 16th & 20th: Introduction to R
  • [Current Topics Workshop] June 30th: R practice
  • [HSPH - BPH] June 15th, 17th, 22nd, 25th: Introduction to R workshop for summer interns
  • [HSCI/HMS/DFHCC] June 22nd, 25th, 29th: Reproducibility Tools (RMarkdown and Git/Github)
  • [HSPH - Epidemiology] June 7th, 8th, 9th: R Bootcamp for summer interns
  • [HMS Nanocourse] June 7th, 9th, 11th: Tools for Reproducible Science
  • [Current Topics Workshop] May 26th: Interactive Data Visualization with RShiny (with Ista Zahn)
  • [HSCI/HMS/DFHCC] May 20th, 24th & 27th: Introduction to single-cell RNA-seq
  • [HSCI/HMS/DFHCC] May 4th, 7th, 11th, 14th: Bulk RNA-seq (Part II - Differential gene expression)
  • [Current Topics Workshop] April 28th: Introduction to RMarkdown
  • [HSCI/HMS/DFHCC] April 13th, 16th, 20th, 23rd: Introduction to R
  • [Current Topics Workshop] March 31th: Gene annotations and functional analysis of gene lists
  • [HSCI/HMS/DFHCC] March 23rd, 26th, 30th & April 2nd: Bulk RNA-seq (Part I - FASTQ to counts)
  • [HSCI/HMS/DFHCC] March 5th, 9th, 12th: Introduction to command-line interface & HMS-RC O2 cluster
  • [Current Topics Workshop] February 24th: Visualizations with ggplot2 and advanced plotting methods
  • [HSCI/HMS/DFHCC] February 16th, 19th, 23rd: Introduction to single-cell RNA-seq
  • [Current Topics Workshop] January 27th: Introduction to R
  • [HSCI/HMS/DFHCC] January 26th, 29th & February 2nd, 5th: Introduction to R

2020 (online)

  • [HSCI/HMS/DFHCC] December 8th, 11th, 15th: Tools for Reproducible Research 
  • [HSCI/HMS/DFHCC] November 17th, 20th, 24th: Introduction to bulk RNA-seq (Fastq to counts) 
  • [HSCI/HMS/DFHCC] November 3rd, 6th,10th: Introduction to command-line interface & HMS-RC O2 cluster
  • [HSCI/HMS/DFHCC] Oct 20th, 23rd, 27th: Introduction to single-cell RNA-seq data analysis
  • [HMS Nanocourse] October 6th, 9th, 13th: Introduction to the command-line interface
  • [HSCI/HMS/DFHCC] September 15th, 18th, 22nd, 25th: Introduction to R
  • [Current Topics Workshop] August 28th: Introduction to Python
  • [HSCI/HMS] August 27th, September 1st, 3rd: Introduction to single-cell RNA-seq
  • [DFHCC] August 4th, 6th, 11th, 13th: Introduction to differential gene expression analysis (bulk RNA-seq)
  • [Current Topics Workshop] July 29th: Introduction to Python
  • [HSCI/HMS] July 16th, 21st, 23rd: Introduction to single-cell RNA-seq
  • [DFHCC] July 6th, 8th, 10th, 13th: Introduction to R
  • [HSCI/HMS] June 16th, 18th, 23rd, 25th: Introduction to differential gene expression analysis (bulk RNA-seq)
  • [HSCI/HMS] May 19th, 21st, 26th, 28th: Introduction to R
  • [Current Topics Workshop] May 13th: Interactive Data Visualization with RShiny (with Ista Zahn)
  • [Current Topics Workshop] April 29th: Introduction to RMarkdown
  • [HMS Nanocourse] April 28th & 30th, May 5th & 7th: Introduction to R
  • [HSCI/HMS] April 14th - 16th: Introduction to R

2020 (in-person)

  • [HSCI/TnT] March 6th: Introduction to the command-line interface
  • [HSCI/TnT] February 27th & 28th: Introduction to single-cell RNA-seq
  • [Current Topics Workshop] February 12th: Introduction to R
  • [HSCI/TnT] February 3rd & 4th: Introduction to R
  • [Current Topics Workshop] January 15th: Introduction to R

2019

  • [Harvard Catalyst] December 9th - December 11th: Introduction to R: Basics, Plots and RNA-seq Differential Expression Analysis Workshop - Part 2
  • [HSCI/TnT] December 2nd & 3rd: Introduction to single-cell RNA-seq
  • [HSCI/TnT] November 19th & 20th: Introduction to R
  • [Harvard Catalyst] October 28th - October 30th Introduction to RNA-seq Analysis Using High-Performance Computing and R - Part 1
  • [HSCI/TnT] October 21st & 22nd: Introduction to differential gene expression analysis (bulk RNA-seq)
  • [HSCI/TnT] October 3rd & 4th: Introduction to R
  • [HSCI/TnT] September 23rd & 24th: Introduction to RNA-seq
  • [HSCI/TnT] September 17th: Introduction to the command-line interface
  • [HSCI/TnT] August 15th & 16th: Introduction to differential gene expression analysis (bulk RNA-seq)
  • [HSCI/TnT] July 29th & 30th: Introduction to R
  • [HSCI/TnT] July 17th & 18th: Introduction to single-cell RNA-seq
  • [HSCI/TnT] July 1st & 2nd: Introduction to R
  • [HSCI/TnT] June 24th & 25th: Introduction to RNA-seq
  • [HSCI/TnT] June 4th: Introduction to the command-line interface
  • [HSCI/TnT] April 29th & 30th: Introduction to ChIP-seq
  • [HSCI/TnT] April 11th: Introduction to the command-line interface
  • [HSCI/TnT] April 1st & 2nd: Introduction to differential gene expression analysis (bulk RNA-seq)
  • [HSCI/TnT] March 12th & 13th: Introduction to R
  • [HSCI/TnT] February 27th & 28th: Introduction to RNA-seq
  • [HSCI/TnT] February 13th: Introduction to the command-line interface
  • [HSCI/TnT] January 28th & 29th: Introduction to R
  • [HSCI/TnT] January 17th: Introduction to the command-line interface

2018

  • [HSCI/TnT] December 5th & 6th: Introduction to R
  • [Harvard Catalyst] November 14th - 16th Introduction to RNA-seq Analysis Using High-Performance Computing and R - Part 2
  • [Harvard Catalyst] October 31st - November 2nd Introduction to RNA-seq Analysis Using High-Performance Computing and R - Part 1
  • [HSCI/TnT] September 5th - October 11th: In-depth NGS data analysis course
  • [HSCI/TnT] August 20th & 21st: Introduction to R
  • [HSCI/TnT] July 30th & 31st, August 1st: Introduction to ChIP-seq using high-performance computing
  • [HSCI/TnT] June 11th - 13th: Introduction to R and Differential Gene Expression (DGE) analysis for RNA-seq
  • [HSCI/TnT] May 30th & May 31st: Introduction to shell and high-performance computing
  • [HSCI/TnT] April 30th & May 1st: Introduction to R
  • [Harvard Catalyst] April 5th, 6th, 12th, 13th: Introduction to R and Differential Gene Expression (DGE) analysis for RNA-seq
  • [HSCI/TnT] March 21st - 23rd: Introduction to ChIP-seq using high-performance computing
  • [HSCI/TnT] February 26th - 28th: Introduction to R and Differential Gene Expression (DGE) analysis for RNA-seq
  • [HSCI/TnT] January 29th - 31st: Introduction to RNA-seq using high-performance computing

2017

  • [HSCI/TnT/HNDC] December 6th & 7th: Introduction to R
  • [HSCI/TnT/HNDC] November 20th & 21st: Introduction to RNA-seq using high-performance computing
  • [Harvard Catalyst] November 1st - 3rd: Introduction to R and Differential Gene Expression (DGE) analysis for RNA-seq
  • [HSCI/TnT/HNDC] October 25th & 26th: Using DESeq2 for Differential Gene Expression
  • [Harvard Catalyst] September 25th - 27th: Introduction to RNA-seq using high-performance computing
  • [HSCI/TnT/HNDC] September 13th & 14th: Introduction to R
  • [HSCI/TnT/HNDC] August 23rd & 24th: Introduction to RNA-seq using high-performance computing
  • [HSCI/TnT/HNDC] May 31st - July 7th: In-depth NGS data analysis course
  • [Harvard Catalyst] May 17th - 19th: Introduction to R and Differential Gene Expression (DGE) analysis for RNA-seq
  • [HNDC] April 20th: Introduction to R
  • [HSCI/TnT/HNDC] April 3rd & 4th: Introduction to R
  • [Harvard Catalyst] March 16th: Introduction to RNA-seq with Galaxy
  • [HSCI] March 6th & 7th: Introduction to UNIX and Orchestra with HMS-RC
  • [HSCI/TnT/HNDC] February 15th: Introduction to Differential Gene Expression (DGE) analysis for RNA-seq
  • [TnT/HNDC] February 10th & 13th: Introduction to R
  • [HSCI] January 24th & 25th: Introduction to R

2016

  • [Harvard Catalyst] November 17th & 18th: Introduction to UNIX and Orchestra with HMS-RC
  • [HSCI/TnT/HNDC] October 31st - December 2nd: In-depth NGS data analysis course (RNA-Seq)
  • [HSCI/TnT/HNDC] October 20th: Introduction to Differential Gene Expression (DGE) analysis for RNA-seq
  • [Harvard Catalyst] October 14th: Introduction to RNA-seq with Galaxy
  • [TnT/HNDC] September 29th & 30th: Introduction to R
  • [HSCI] September 8th & 9th: Introduction to R
  • [HSCI] August 22nd & 23rd: Introduction to UNIX and Orchestra with HMS-RC
  • [HSCI/TnT/HNDC] June 22nd - August 12th: In-depth NGS data analysis course
  • [HSCI] May 23rd & 24th: Introduction to UNIX and Orchestra with HMS-RC
  • [TnT/HNDC] May 12th & 12th: Introduction to UNIX and Orchestra with HMS-RC
  • [HSCI/TnT/HNDC] February 8th - March 8th: In-depth NGS data analysis course

2015

  • [HSCI] December 11th: Introduction to R
  • [TnT/HNDC] November 23rd: Introduction to RNA-seq with Galaxy
  • [HSCI] November 13th: Introduction to RNA-seq with Galaxy
  • [TnT/HNDC] October 8th & 9th: Introduction to UNIX and Orchestra with HMS-RC
  • [TnT/HNDC] October 2nd: Introduction to RNA-seq with Galaxy
  • [TnT/HNDC] September 21st: Introduction to RNA-seq with Galaxy
  • [TnT/HNDC] September 11th: ChIP-Seq with Galaxy
  • [TnT/HNDC] August 14th: Introduction to RNA-seq with Galaxy
  • [TnT/HNDC] July 22nd: A Hands-on Introduction to Python (in collaboration with IQSS)
  • [TnT/HNDC] July 17th: Introduction to RNA-seq with Galaxy
  • [TnT/HNDC] June 26th: Introduction to R and R graphics with ggplot2 (in collaboration with IQSS)